The following tools have been installed/updated on Galaxy Australia

Annotation

• snpeff was updated to 268d162b9c49
• snpeff was updated to 5a29ab10dba6
• snpeff was updated to 74aebe30fb52

Assembly

• bandage revision b2860df42e16 was installed
• spades was updated to b8c00ce5dfa0

Collection Operations

• collapse_collections was updated to 33151a38533a
• collapse_collections was updated to 830961c48e42

EMBOSS

• emboss_5 was updated to dba489bfcd62

FASTA/FASTQ

• fastp revision 1d8fe9bc4cb0 was installed

FASTQ Quality Control

• fastqc was updated to e7b2202befea
• trim_galore was updated to 084bbd8ba7b8

Get Data

• ncbi_acc_download revision 1c58de56d587 was installed

Mapping

• bwa was updated to 01ac0a5fedc3

Metabolomics

• tablemerge revision e44c5246247a was installed

Metagenomic analyses

• picrust_categorize revision bee527de98ac was installed
• picrust_compare_biom revision 0ba7dfaa941d was installed
• picrust_format_tree_and_trait_table revision 8ab93cd74444 was installed
• picrust_metagenome_contributions revision da4d1ff7009e was installed
• picrust_normalize_by_copy_number revision 2e62e32d4f33 was installed
• picrust_predict_metagenomes revision 49b6c4392fdc was installed

Multiple Alignments

• mafft was updated to 15974dd17515

Phylogenetics

• hyphy_gard revision 6283babe736e was installed
• hyphy_absrel revision f73435dc282b was installed

Picard

• picard was updated to f6ced08779c4
• picard was updated to a1f0b3f4b781

SAM/BAM

• samtools_fastx revision a8d69aee190e was installed
• samtool_filter2 was updated to 649a225999a5
• samtools_bedcov was updated to 9149ad20699a

VCF/BCF

• bcftools_annotate was updated to 8e01baf41774
• bcftools_call was updated to 5801eff9ac7e
• bcftools_cnv was updated to b2d1b7dda2b7
• vcffilter was updated to fa24bf0598f4

Variant Calling

• lofreq_viterbi revision ecd80c7c3886 was installed
• lofreq_call revision 03627f24605f was installed
• freebayes was updated to ef2c525bd8cd