The following tools have been installed/updated on Galaxy Australia
Assembly
- velvet was updated to 5da9a0e2fb2d
BED
- bedtools was updated to b28e0cfa7ba1
Convert Formats
- tabular_to_fasta was updated to 0a7799698fe5
- tabular_to_fastq was updated to 2dcfbbf9071a
- fasta_to_tabular was updated to e7ed3c310b74
DeepTools
- deeptools_bam_compare was updated to e821645ef8fc
- deeptools_bam_coverage was updated to bb1e4f63e0e6
- deeptools_bigwig_compare was updated to 26e7304d6737
- deeptools_compute_gc_bias was updated to 2bc10a9ca58b
- deeptools_compute_matrix was updated to 514fa53b5efb
- deeptools_compute_matrix_operations was updated to ee3a1b0f45f1
- deeptools_multi_bam_summary was updated to 78f405266706
- deeptools_multi_bigwig_summary was updated to 3c9f0c486cca
- deeptools_plot_correlation was updated to 32e451def88c
- deeptools_plot_coverage was updated to 56bce3c82278
- deeptools_plot_enrichment was updated to e65d16fb2724
- deeptools_plot_fingerprint was updated to 2da482e408b8
- deeptools_plot_pca was updated to 69264da0ce77
- deeptools_plot_profile was updated to c361b12d207a
FASTA/FASTQ
- fasta_stats revision 9c620a950d3a was installed
- fasta_concatenate_by_species was updated to 25b8736c627a
- fastx_artifacts_filter was updated to d5e9e83cd3d8
- fastx_clipper was updated to b8658f852bc7
- fastx_renamer was updated to b29d37ca9e41
- fastx_reverse_complement was updated to 6027ef51ef91
- fastx_trimmer was updated to 61b4cedc8934
FASTQ Quality Control
- fastq_quality_filter was updated to ce9cd02d5b88
- fastq_trimmer_by_quality was updated to 8050e091e99b
- multiqc was updated to 3d93dd18d9f8
Gemini Tools
- gemini_annotate was updated to f2f3bc622a16
- gemini_query was updated to da74170c55c7
Get Data
- sra_tools was updated to aad3885b3216
Graph/Display Data
- plotly_regression_performance_plots revision 389227fa1864 was installed
- plotly_ml_performance_plots revision 62e3a4e8c54c was installed
- plotly_parallel_coordinates_plot revision 9958188c6195 was installed
- jbrowse was updated to 667e17248bfe
Machine Learning
- sklearn_ensemble revision 3ab7af14f1b5 was installed
- sklearn_searchcv revision 1ae5dfd5ac17 was installed
- sklearn_svm_classifier revision d2afc87db26b was installed
- sklearn_generalized_linear revision 3e4a7684d402 was installed
Phylogenetics
- hyphy_absrel was updated to cce7b18495e4
- hyphy_gard was updated to aa8cc71438cf
Proteomics
- cardinal_classification revision 42f6e30b00f2 was installed
- cardinal_combine revision b41107d8fe89 was installed
- cardinal_mz_images revision 4a05e47cd0ea was installed
- maldi_quant_peak_detection revision e66f552a3c47 was installed
- maldi_quant_preprocessing revision 71411ac28268 was installed
- cardinal_data_exporter revision 90d2e00e1304 was installed
- cardinal_filtering revision 528fb09022be was installed
- cardinal_preprocessing revision ed9ed1e6cca2 was installed
- cardinal_quality_report revision 19f68d9ae773 was installed
- cardinal_segmentations revision b16b64ca7b7c was installed
- cardinal_spectra_plots revision f17b01ec5c22 was installed
SAM/BAM
- sam2interval was updated to 75557c0908a9
- sam_pileup was updated to a3b4ad6858ff
Statistics
- sklearn_build_pipeline revision 97dce66fe158 was installed
- iwtomics_plotwithscale revision 1bc9150ed125 was installed
- iwtomics_testandplot revision 94965e369be4 was installed
Text Manipulation
- add_value revision 745871c0b055 was installed
- merge_cols revision f2aac0c5c60d was installed
- join_files_on_column_fuzzy revision 22ec3c1a20cd was installed
- text_processing was updated to fb4ff3c42cd3
VCF/BCF
- vcf2tsv was updated to 285060661b45
- vcfaddinfo was updated to 6ea73d6151ec
- vcfallelicprimitives was updated to 57a16b310fe8
- vcfannotategenotypes was updated to 84959112d9a6
- vcfannotate was updated to 01e0321aca98
- vcfbedintersect was updated to aea8e90ad788
- vcfbreakcreatemulti was updated to 9fd5d91eb91b
- vcfcheck was updated to 2968c6916579
- vcfcombine was updated to 1f0ba67cc85a
- vcfcommonsamples was updated to f1852ecef841
- vcfdistance was updated to 5822b40f3037
- vcffixup was updated to 11f62f071125
- vcfflatten was updated to f285aa6bdcfb
- vcfgeno2haplo was updated to a3dea556218d
- vcfgenotypes was updated to a60ae8af21a1
- vcfhethom was updated to 8254e0fe7358
- vcfleftalign was updated to 29f9b782727e
- vcfprimers was updated to 17096387c0e6
- vcfrandomsample was updated to 6257ee3b50d3
- vcfselectsamples was updated to 2ba3b87f904f
- vcfsort was updated to f0580efedada
- vcfvcfintersect was updated to 166c4f50525f
Variant Calling
- lofreq_call was updated to dfadc322b065
Supported by
