Tools installed
| Section | Tool |
|---|---|
| ChemicalToolBox | ambertools_acpype 27ee142314a9 mdanalysis_cosine_analysis 48d6a6eb438b natural_product_likeness 40d181cc8c19 |
| Get Data | uniprot_rest_interface 054483e27a35 |
| Graph/Display Data | pathview 03c13085aecc |
| Machine Learning | keras_model_config 2a853a2d2e72 |
| Mapping | bowtie_wrappers b46e7d48076a |
| Operate on Genomic Intervals | translate_bed 038ecf54cbec |
| Proteomics | openms_decoydatabase 370141bc0da3 peptide_genomic_coordinate 5f49ffce52cb pep_pointer 073a2965e3b2 |
| Text Manipulation | query_tabular 2e8f945f7285, 1ea4e668bf73 filter_tabular 34d29339abab, 9cc411a62277 |
Tools updated
| Section | Tool |
|---|---|
| Assembly | bandage 94fe43e75ddc miniasm 8b6d0d85252b |
| ChemicalToolBox | gmx_sim f197e34c33a9 |
| DeepTools | deeptools_compute_matrix fb9cf9c97ec4 deeptools_plot_heatmap 010e58e9d822 |
| Get Data | unipept 34758ab8aaa4 |
| Graph/Display Data | pygenometracks 326a3db8d9d1 jbrowse 6cd09d7b5f37 |
| Imaging | cp_cellprofiler e917a2424690 cp_common e7273daa5ae2 cp_convert_objects_to_image df3ad3ba5c6f cp_display_data_on_image 2484086dee41 cp_enhance_or_suppress_features f2ed92b011a9 cp_export_to_spreadsheet f8fa0f6718a3 cp_gray_to_color 31d195bedf6d cp_identify_primary_objects 993faa34333b cp_image_math c09dcda1143f cp_mask_image 3a05117669cf cp_measure_granularity a1a961c46d4b cp_measure_image_area_occupied 20dbb1f7ec7b cp_measure_image_intensity 5499dc6f8ac1 cp_measure_image_quality e972e07c7845 cp_measure_object_intensity 980aed9e8fd5 cp_measure_object_size_shape 79e10d12d90a cp_measure_texture 035a58c7f54a cp_relate_objects 8083a87d2fdf cp_save_images 4ecf93628f97 |
| Mapping | rna_starsolo ec9cbd6b9a49 |
| Metagenomic Analysis | humann2_genefamilies_genus_level 6c84982ee6f7, 79cd822debef humann2_regroup_table bd7a9c6efb10, 88ff1d78fd30 humann2_renorm_table b084117133af, cd235981c423 humann2_unpack_pathways 9704f1a3b32d, 3115a530686e |
| Proteomics | metaquantome_db 0ed07016d668 metaquantome_expand 352b37c66d97 metaquantome_filter 4f359549383c metaquantome_sample e79958768a2c metaquantome_stat d2eac53666f0 metaquantome_viz 1199751329b0 peptideshaker 1beff3ddce58, 3634c90301af, a72c48001f7c |
| RNA-seq | transdecoder d0d4cef4f967 rgrnastar 7ed2edc1337f featurecounts f3a5f075498f |
| VCF/BCF | bcftools_annotate 403553ae19f6 bcftools_call 072f606e2e69 bcftools_cnv 01d6b7d6365e bcftools_concat d40d4bf05718 bcftools_convert_from_vcf b8e9da766b0f bcftools_convert_to_vcf fec517907949 bcftools_filter 6ca7c55a27e8 bcftools_isec 02f349bdbf96 bcftools_merge e03f2f3ac3a9 bcftools_mpileup 0dbff46d5a1b bcftools_norm c077f71d351f bcftools_plugin_counts 4813f99d81b7 bcftools_plugin_dosage 5c232a738c74 bcftools_plugin_fill_an_ac 582f8b13873d bcftools_plugin_fill_tags bf7d6acd9884 bcftools_plugin_fixploidy 365325116147 bcftools_plugin_impute_info 776ad0b21536 bcftools_plugin_mendelian bf235558f2cf bcftools_plugin_missing2ref dfef7a353ed0 bcftools_plugin_setgt 8abfcd1a6949 bcftools_plugin_tag2tag bdfdf5f6e950 bcftools_query c9c5718edc19 bcftools_query_list_samples ed4ea9de1791 bcftools_reheader 9ef52d95114b bcftools_roh b76adb2f1c51 bcftools_stats b17394940c7a bcftools_view 23680a42e149 |
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