Tools installed
| Section | Tool |
|---|---|
| Annotation | exonerate a03dead1bede |
| Metagenomic Analysis | khmer_abundance_distribution c0caca5af183 khmer_abundance_distribution_single c018a72b523e khmer_count_median 06d1d91c67e5 khmer_extract_partitions 98b53d46e851 khmer_filter_abundance 97f65399e30d khmer_filter_below_abundance_cutoff b469ab47b490 khmer_normalize_by_median e84073b420a8 khmer_partition b7429b53be2a |
| Multiple Alignments | gecko 5efbd15675ca mummer_delta_filter b3acbb3a6af0 mummer_dnadiff 60698466facd mummer_show_coords 959c1f8dae95 chromeister a6d1f83c46b4, e483be1014b6 |
Tools updated
| Section | Tool |
|---|---|
| Annotation | abricate 3f3e247c053d, c2ef298da409 |
| Assembly | miniasm 73a3846701e1 |
| BED | bedtools ce3c7f062223 |
| Blast + | diamond 54f751e413f4 |
| ChemicalToolBox | sucos_max_score 9b48456a96fe |
| Convert Formats | thermo_raw_file_converter b9b385097f13 |
| FASTQ Quality Control | filtlong a72af9de6bf5 |
| Get Data | unipept 75b3b3d0adbf |
| Graph/Display Data | jbrowse 4542035c1075 |
| Machine Learning | keras_model_config 64bbfa592868 |
| Mapping | minimap2 f54f5baedfdd lastz 2ff111fac1d7 |
| Metagenomic Analysis | humann2_genefamilies_genus_level 654548ae1357 humann2_regroup_table e66ab198ec15 humann2_renorm_table c6676a890f50 humann2_unpack_pathways cad93abecac9 |
| Nanopore | medaka_consensus db25ec99c3ea medaka_variant 43815fa60f3a porechop 5f76b20953e5 |
| Phylogenetics | hyphy_absrel 5a7c56a5cc08 hyphy_gard 3b96e92e8ec3 |
| Proteomics | peptideshaker da885ca16cb2 |
| RNA-seq | kallisto_quant 40985510cd98 |
| Single-cell | scanpy_cluster_reduce_dimension 3e4e1cf73d98 scanpy_filter 5511647110ff scanpy_inspect e4c99c83dfbf scanpy_normalize 51d945eab1e1 scanpy_plot 9a169729c9f9 scanpy_remove_confounders c2ef03559dc6 |
| VCF/BCF | bcftools_view 98d5499ead46 |
Supported by
