Tools installed
| Section | Tool |
|---|---|
| Blast + | blastxml_to_gapped_gff3 561e827baa5f |
| Metagenomic Analysis | dada2_dada 18a502a9d287 dada2_filterandtrim f732237754fc dada2_learnerrors 8c202e741d68 dada2_makesequencetable 1c9b3bcd4261 dada2_mergepairs 306a40d4bb8f dada2_plotcomplexity ac72310b038a dada2_plotqualityprofile f947b4bb5107 dada2_removebimeradenovo 04144473e59e dada2_seqcounts d943081510da dada2_assigntaxonomyaddspecies 5b5a7af9fbb4 |
| Multiple Alignments | mummer_mummer 48823c9635a4 mummer_mummerplot ebe3b0f84de9 mummer_nucmer 636b049e6141 |
| Nanopore | medaka_consensus_pipeline a7228a7ea146, 1ca4ce7241fd |
| Other Tools | pmids_to_pubtator_matrix 69714f06f18b |
Tools updated
| Section | Tool |
|---|---|
| BED | bedtools fe5b4cb8356c |
| Convert Formats | thermo_raw_file_converter 19e45916daf9 |
| DNA Metabarcoding | obi_annotate f82cefbbcea5 obi_clean 12baadec7809 obi_convert 374fd9feb032 obi_grep fe7ec8a3d35e obi_illumina_pairend 83fbdf93d51e obi_ngsfilter 3bf57dadf7cd obi_sort e614dcabd870 obi_stat 723a93febe89 obi_tab 5f7003111e32 obi_uniq ec215ed98831 |
| FASTA/FASTQ | fasta_stats cd0874854f51 |
| Get Data | uniprot_rest_interface bfdc6a7ffd3a sra_tools 69ebb7f46e45 |
| Machine Learning | keras_model_config 0c933465d70e |
| Mapping | bwa 64f11cf59c6e |
| Metagenomic Analysis | kraken2 e674066930b2 |
| Nanopore | medaka_consensus 0413e62b757a medaka_variant 9fb055604648 |
| Phylogenetics | hyphy_absrel f04a1264e2a2, 5f2ca10db92a hyphy_gard 4755f52427c4 |
| Proteomics | peptideshaker 07ff622ec007 encyclopedia_encyclopedia d263296cd73e encyclopedia_quantify 1c5cbf8f79ce encyclopedia_walnut d6a4dfdad269 cardinal_classification ece627528a78 cardinal_combine a8ecb52264c4 |
| RAD-seq | stacks2_clonefilter 289b7d6b69a4 stacks2_cstacks c207119ba5f6 stacks2_gstacks eb784fa07f80 stacks2_kmerfilter 1544278c272e stacks2_populations 887cf585cafc stacks2_procrad e897c74a48bb stacks2_refmap 4f65e343ecdf stacks2_shortreads c5d7050e4ad7 stacks2_tsv2bam a9c34a289493 stacks2_sstacks cd034465d4a4 |
| RNA-seq | kallisto_pseudo 01247aaf0a10 |
| Text Manipulation | table_compute 93a3ce78ce55 |
| Variant Calling | breseq 82fb5e3bb93e snippy fa016f1eea1a |
Supported by
