The following tools have been installed/updated on Galaxy Australia
Assembly
- flye was updated to 3ee0ef312022
ChemicalToolBox
- get_pdb revision 538790c6c21b was installed
- sucos_max_score revision bf99565cec1f, 85fad59f8168 was installed
- bio3d_pca revision 24867ab16f36 was installed
- bio3d_rmsd revision 77e28e1da9f4 was installed
- enumerate_charges revision 2a868592ebcb was installed
- gmx_setup revision ccdf0b30a422 was installed
- gmx_solvate revision 3c77d66e7fe5 was installed
- openbabel_compound_convert revision e6011617c748 was installed
- rdock_rbdock revision a428230b38f6 was installed
- bio3d_rmsf was updated to 6bcb804a54c3
- gmx_em was updated to 476cdf677b03
- gmx_sim was updated to b1061cc2653a
- rdock_rbcavity was updated to d52d6ee95cf2
Collection Operations
- split_file_to_collection was updated to e77b954f0da5
Convert Formats
- fastq_to_fasta was updated to e282bc27be9a
- fastq_to_tabular was updated to 4b347702c4aa
FASTA/FASTQ
- fasta_compute_length was updated to 7d37cfda8e00
- fasta_filter_by_length was updated to 8cacfcf96a52
- fasta_nucleotide_changer was updated to ec0b5076173a
- fastq_combiner was updated to f1dc2a761c30
- fastq_filter was updated to 81a9090d6df3
- fastq_groomer was updated to 47e5dbc3e790
- fastq_manipulation was updated to 5b87038565bb
- fastq_masker_by_quality was updated to 9dfda4e310ed
- fastq_paired_end_deinterlacer was updated to f3936d0632cb
- fastq_paired_end_interlacer was updated to 2ccb8dcabddc
- fastq_paired_end_joiner was updated to c885369b207b
- fastq_paired_end_splitter was updated to 249c8393f2d4
- fastq_stats was updated to f0e7deab6518
- fastq_trimmer was updated to b63b2bfb3ea3
FASTQ Quality Control
- fastx_nucleotides_distribution was updated to ad116ae3f4d9
Gemini Tools
- gemini_inheritance revision 18d13111692b was installed
- gemini_load was updated to 45296e47d565
- gemini_actionable_mutations was updated to 142d95ab942e
- gemini_amend was updated to be828b79bd4d
- gemini_burden was updated to df57188562f0
- gemini_db_info was updated to 7d75673f4d6f
- gemini_gene_wise was updated to 452104bdc655
- gemini_lof_sieve was updated to 2969a1f43b7d
- gemini_qc was updated to 86e46972e183
- gemini_roh was updated to 345d41f3f574
- gemini_set_somatic was updated to e4e2128460e3
- gemini_stats was updated to 5c9efee9cb1e
- gemini_windower was updated to 0c58ba91d018
Genome Editing
- mageck_count was updated to e329d44424d7
- mageck_gsea was updated to b946929d31c4
- mageck_mle was updated to 26126538a86f
- mageck_pathway was updated to 39a996d44e16
- mageck_test was updated to 9b4f4533c9ee
Graph/Display Data
- fastq_quality_boxplot was updated to 7cf5b1d072b5
Metagenomic Analysis
- kraken was updated to aec58624706f
- fasttree was updated to e005e659ae21
Operate on Genomic Intervals
- concat was updated to 35a89f8cc96e
Phylogenetics
- iqtree was updated to f97743d52b87
RNA-seq
- qualimap_counts revision d696cf0a9622 was installed
- qualimap_rnaseq revision 43a1c3e1a4d0 was installed
- kallisto_pseudo was updated to 5ae5c312d718
- rgrnastar was updated to b9e04854e2bb
- stringtie was updated to 1ebd14235b92
- trinity was updated to d84caa5a98ad
SAM/BAM
- qualimap_bamqc revision e7fd6754d093 was installed
- qualimap_multi_bamqc revision e38af83df163 was installed
- bamtools_filter revision cb20f99fd45b was installed
- bam_to_sam was updated to 88eedb4abea0
- sam_to_bam was updated to cf1ffd88f895
- samtools_flagstat was updated to 22970df7a40e
- samtools_idxstats was updated to 7a6034296ae9
- samtools_phase was updated to b5c3b1856370
- samtools_rmdup was updated to 586f9e1cdb2b
- samtools_stats was updated to 145f6d74ff5e
VCF/BCF
- bcftools_consensus was updated to e522022137f6
- bcftools_convert_to_vcf was updated to 8bb5efd7a3dd
- bcftools_stats was updated to 9c0028888512
- bcftools_concat was updated to 874cc12ae316
Variant Calling
- snippy was updated to 5bbf9eada9c2
- lofreq_viterbi was updated to cdaab621d454
iVar
- ivar_consensus revision f362150bef41, a38934e303b9 was installed
- ivar_filtervariants revision c88553ec696e, 2b95d5c04908 was installed
- ivar_removereads revision bd2a7d1316b9, 9eaadf03e0df was installed
- ivar_trim revision 8858fa037a15, d37ede8589b2 was installed
- ivar_variants revision 12d66d0d05ac, c5c9f02b6167 was installed
- ivar_getmasked was updated to fafb3d685fa9, ad0dc9f4c9e2
Supported by
