Tools installed
| Section | Tool |
|---|---|
| Annotation | goslimmer de3e053bd6a5 goenrichment 2c7c9646ccf0 sortmerna eb35257d2e29 hmmer3 54b6b4d0613a |
| Convert Formats | gtftobed12 b026dae67fba |
| FASTA/FASTQ | ucsc_fasplit 71f649c23021 |
| Fetch Sequences/Alignments | fraggenescan 1f0a3e4497d4 |
| Join, Subtract and Group | datamash_transpose 22c2a1ac7ae3 |
| Mapping | rna_starsolo 178bdbdb6d24 |
| Metagenomic Analysis | maxbin2 cfd50144a871 cat_bins 0094893f5001 interproscan5 e32f2ea6a139 |
| Proteomics | maxquant_mqpar 3fc2116ac6d9 |
| RNA-seq | blockbuster 7c7ff7a3503f deg_annotate e98d4ab5b5bc heinz 704c401e0afb blockclust aab6cf87b40a |
| Single-cell | dropletutils cdf4443d5625 |
| Variant Calling | lofreq_alnqual 435b157bed6d lofreq_filter 9cb929f21cfa lofreq_indelqual f4473557ffc7 |
| Viral Tools | quasitools 9def47f3c1e4 |
Tools updated
| Section | Tool |
|---|---|
| BED | bedtools e19bebe96cd2 |
| ChemicalToolBox | rdock_rbcavity 744a777e9f90 rdock_rbdock a22969b08177 |
| FASTQ Quality Control | multiqc bf675f34b056 fastqc f2e8552cf1d0 |
| Graph/Display Data | circos 740057a5126d, 4b519282a05b plotly_ml_performance_plots 85da91bbdbfb plotly_parallel_coordinates_plot 7b21a9b5922f |
| Machine Learning | sklearn_ensemble 1a53edc4b438 sklearn_searchcv 25ab6b4e376e sklearn_svm_classifier f9639b488779 sklearn_generalized_linear 91c4e3331208 |
| Mapping | bwa 3fe632431b68 |
| RNA-seq | trinity_define_clusters_by_cutting_tree 55292a66e7c1 |
| SAM/BAM | qualimap_bamqc 5f8e69cc4c6e, 19ece8afbaab |
| Single-cell | scanpy_filter 3c86f71498bc scanpy_normalize a407e7f8bdc1 scanpy_remove_confounders 215733a383f2 |
| Statistics | sklearn_build_pipeline 840f29aad145 |
| Text Manipulation | text_processing 9ff72e942410 |
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