Tools installed
| Section | Tool |
|---|---|
| Annotation | gff_to_prot 2aea122fbd25 maker d46d803ca6cc transit_gumbel f50807720df1 |
| Convert Formats | mz_to_sqlite f5c632894818 |
| Get Data | unipept 9aaa46d45472 |
| Imaging | cp_cellprofiler fca368c99299 cp_common 27396311a314 cp_convert_objects_to_image 2690da374874 cp_display_data_on_image 4e12ef887a2a cp_enhance_or_suppress_features 3f9747bda8c4 cp_export_to_spreadsheet 72a7f23f3a79 cp_gray_to_color bbf1ef17c01b cp_identify_primary_objects 52c01fb29b2a cp_image_math 6d3851ac885f cp_mask_image ca1421f7e3ed cp_measure_granularity 382413f8ec1d cp_measure_image_area_occupied 7a08edbc790e cp_measure_image_intensity 2681008d726f cp_measure_image_quality 08a2cf887a44 cp_measure_object_intensity b867e9317a06 cp_measure_object_size_shape 5c9549983af8 cp_measure_texture 658a2a451aec cp_relate_objects f3f45c42bc36 cp_save_images a45d360ae9d9 |
| Proteomics | openms_xmlvalidator 78c080d36945 custom_pro_db 2c7df0077d28 metaquantome_db 85b8866f06d7 metaquantome_expand 1974224d63c2 metaquantome_filter 99450519d727 metaquantome_sample c7745841de24 metaquantome_stat da986f83631b metaquantome_viz 944b43462104 |
Tools updated
| Section | Tool |
|---|---|
| Assembly | metaspades 2ecf5a570907 velvetoptimiser 4a53b89fa703 |
| Convert Formats | gffcompare_to_bed ba5368c19dbd |
| Mapping | bowtie2 09b2cdb7ace5 |
| Mothur | mothur_align_check 2f668a63a256 mothur_align_seqs abf7c15ecfef mothur_amova 58b8ae43d27f mothur_anosim 4a283edb151c mothur_bin_seqs 65000a433c3b mothur_biom_info 31fa2d557ff2 mothur_chimera_bellerophon 14a7c1eca23d mothur_chimera_ccode 751904c1033d mothur_chimera_check 74dfe7be1563 mothur_chimera_perseus 6db50600493e mothur_chimera_pintail 5f66e6f7f6c0 mothur_chimera_slayer ab328c924a02 mothur_chimera_uchime 0706d327ecae mothur_chimera_vsearch de3cfb122105 mothur_chop_seqs e1dd67d13282 mothur_classify_otu 02446d12c359 mothur_classify_seqs 09bf9e496c64 mothur_classify_tree 5d8809423177 mothur_clearcut ad924a6328cc mothur_cluster 528f950d1044 mothur_cluster_classic 9bae6b20ed44 mothur_cluster_fragments 08b0e9f01d65 mothur_cluster_split 1b7fd1678230 mothur_collect_shared 21a043c3ae00 mothur_collect_single c9d3eed082fc mothur_consensus_seqs 6f281dc9d01c mothur_cooccurrence ffdcb7942343 mothur_corr_axes 03b02c255008 mothur_count_groups 03c86648a52e mothur_count_seqs 7a6f9c899221 mothur_create_database 16f6d606521a mothur_degap_seqs 6f08af23888a mothur_deunique_seqs f6c604b2793e mothur_deunique_tree d247213cebfc mothur_dist_seqs 0554c9338ca0 mothur_dist_shared f25598da7174 mothur_fastq_info a630c5167f5d mothur_filter_seqs 3524ca06478e mothur_filter_shared 2d1dbf69f589 mothur_get_communitytype 10c5aa12a1d5 mothur_get_coremicrobiome da05ce41f8f0 mothur_get_dists 10005fd5ad53 mothur_get_group 65d9f4688890 mothur_get_groups 03af14e245fb mothur_get_label ee13e5a4f9f3 mothur_get_lineage 0bbfc05d924e mothur_get_mimarkspackage 2d19319f528a mothur_get_otulabels fbd1d5bf02bf mothur_get_otulist 85f75125d861 mothur_get_oturep 305ce07a4b16 mothur_get_otus dbb1bc225df1 mothur_get_rabund 4a52424269e1 mothur_get_relabund 1593a3542944 mothur_get_sabund c550ce2ebe1f mothur_get_seqs f5cb275acba9 mothur_get_sharedseqs f8bf3dd4db47 mothur_heatmap_bin aeacbc9d5333 mothur_heatmap_sim 7f5707dd6073 mothur_homova 89054fe2207f mothur_indicator 1c6dadf7bc72 mothur_lefse ccd1ce71c11f mothur_libshuff 1cd0f3241d5b mothur_list_otulabels 1c8906cc1ddd mothur_list_seqs dd84878a5f99 mothur_make_biom 55e975c9a012 mothur_make_contigs 4e9136c2c4c3 mothur_make_design 6ec3ec95ae68 mothur_make_fastq f09c0a3bf8b9 mothur_make_group 37af7f0540e5 mothur_make_lefse 470c067fc0a0 mothur_make_lookup 23c1af22331b mothur_make_shared 0851ae17c58e mothur_make_sra 88fa82b36a72 mothur_mantel b0f1e033e18d mothur_merge_count 6e3d1e4c9786 mothur_merge_files 7bd37d6decd9 mothur_merge_groups ddd068a49efe mothur_merge_sfffiles b562d71b9508 mothur_merge_taxsummary 733bfc5872b1 mothur_metastats 19836a38dc20 mothur_mimarks_attributes b9fe5cf8f2bc mothur_nmds a81680d1db78 mothur_normalize_shared 5e94c135ef00 mothur_otu_association a02117aa58a5 mothur_otu_hierarchy f9326e93f5c3 mothur_pairwise_seqs cfe04aa12a39 mothur_parse_list 408650f291f7 mothur_parsimony aff64115d95f mothur_pca 46689a444f2b mothur_pcoa 5bc3e30e1d9e mothur_pcr_seqs 7dba7376870c mothur_phylo_diversity c76d9ea84d39 mothur_phylotype 4d219b4dfd6a mothur_pre_cluster 05183ee20cf8 mothur_primer_design 0b63f5faf6e5 mothur_rarefaction_shared 2175b62675ed mothur_rarefaction_single af521db77c56 mothur_remove_dists 56ad298415d8 mothur_remove_groups 498dc0671d9e mothur_remove_lineage 947faa8b3205 mothur_remove_otulabels b9e2724e9fc7 mothur_remove_otus 0e73681a7cdc mothur_remove_rare 9ac808d4e0b5 mothur_remove_seqs 5097ac2cbfc3 mothur_rename_seqs 583af69719db mothur_reverse_seqs 7378ce8fb5c1 mothur_screen_seqs 63b74bfc8052 mothur_sens_spec 5ff10ccd7100 mothur_seq_error 5a7674ac2c59 mothur_sffinfo 09e3b0966a11 mothur_shhh_flows dfaf60f40e94 mothur_shhh_seqs d7e469b059da mothur_sort_seqs fc60d2e290a4 mothur_split_abund cd7b11709aa9 mothur_split_groups 618bf5d295e7 mothur_sub_sample 67cb43432196 mothur_summary_qual 86a40294e149 mothur_summary_seqs 609770e516fa mothur_summary_shared 545234c1d925 mothur_summary_single 2344ed181ae6 mothur_summary_tax a7e1d78c70f5 mothur_taxonomy_to_krona a97107cc4c93 mothur_tree_shared 43e2715e98c9 mothur_trim_flows 1fead600dbd4 mothur_trim_seqs bf67e22a405f mothur_unifrac_unweighted 2933ee6251d8 mothur_unifrac_weighted 88c441e56578 mothur_unique_seqs d466580cd706 mothur_venn 4db54b1c1d83 |
| Phylogenetics | hyphy_absrel 3b8b5bde0bd9 hyphy_gard a185b079b095 |
| Proteomics | openms_consensusid 01dbaf6a57e0 openms_falsediscoveryrate c9eff69a7c62 openms_featurefindermultiplex 5e948629bc73 openms_fidoadapter 658494a2cb00 openms_fileconverter 9b7977080f6d openms_filefilter 0bb5056cb775 openms_fileinfo 52ba9695e752 openms_filemerger 92352a475eed openms_highresprecursormasscorrector 0efbc235f314 openms_idconflictresolver c28f13cab67a openms_idfilter ca799a7246e7 openms_idmapper 39caaa778d2e openms_idmerger f817513840a9 openms_idposteriorerrorprobability 111c3a00136d openms_idscoreswitcher be74a8cd7d66 openms_msgfplusadapter c18d8efa4474 openms_multiplexresolver d0304fb829c0 openms_mztabexporter ee860980edc6 openms_openswathanalyzer 0ced5bc9f4dd openms_openswathassaygenerator 2a9ff56cb279 openms_openswathconfidencescoring 1bf940c18d93 openms_openswathdecoygenerator f861ec9fbe59 openms_openswathdiaprescoring d4396637b9f5 openms_openswathfilesplitter 89254095cbf6 openms_openswathmzmlfilecacher f9ed7e074900 openms_openswathrtnormalizer 6e8cc5ed2a9b openms_openswathworkflow 2aebe58de46e openms_peakpickerhires decc397c3b7e openms_peptideindexer dd173849c3d8 openms_proteinquantifier 16026cdb1330 openms_textexporter 9020199dba0a openms_xtandemadapter 7f6a1f27553e |
| RNA-seq | hisat2 26371a1df031 |
| SAM/BAM | pileup_interval 9c1c0b947e46 |
| Text Manipulation | column_maker 13b6f0007d9e |
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