Tools installed
| Section | Tool |
|---|---|
| DNA Metabarcoding | obi_annotate 3021b9f5809f obi_clean 7d16de45c021 obi_convert 4d705e3443a7 obi_grep e9e49cf06b42 obi_illumina_pairend 94f412098ac8 obi_ngsfilter 76e69de726b2 obi_stat 39320fee9d70 obi_tab 3299c7d5268f obi_uniq c0f7b58b4ce4 obi_sort 12b9e285ca1c |
Tools updated
| Section | Tool |
|---|---|
| Assembly | busco cf13a1e03e5b unicycler 9e3e80cc4ad4 metaspades ce02f513e598 |
| Bacterial Typing | sistr_cmd 24a7a95867b0 |
| ChemicalToolBox | ambertools_acpype c8cdde00b105 gmx_editconf 0fac8e2afc13 gmx_em f5d979cb4b54 gmx_merge_topology_files 319a28774da9 gmx_setup 2c349b027a01 gmx_sim 807aa4c9293d gmx_solvate 2c8ed1b52bf7 md_converter ccfbd956a2d3 |
| FASTA/FASTQ | cutadapt 093678460093 |
| HiCExplorer | hicexplorer_hicbuildmatrix 9edf8894a22d hicexplorer_hicfindtads d404277cc87a hicexplorer_hicmergematrixbins 03dd3c16ae4e hicexplorer_hicpca 3b5b54ed6392 hicexplorer_hicplotmatrix 7babd8a46fe0 |
| Metagenomic Analysis | metaphlan2krona ebb74774457e |
| Proteomics | peptide_genomic_coordinate cb0378d2d487 maxquant f522c08e900c |
| RNA-seq | htseq_count 916cb26bd9d3 rgrnastar c772497b2c32 describe_samples 6d6982a1d1d0 dexseq 62adf13b86ea trinity 26d5493b20b6 trinity_abundance_estimates_to_matrix 81a4697677e7 trinity_align_and_estimate_abundance 893655fa55f9 trinity_analyze_diff_expr 4a816294c512 trinity_contig_exn50_statistic b1e9a0355166 trinity_define_clusters_by_cutting_tree d40101d3a2af trinity_filter_low_expr_transcripts 1007cdb58d91 trinity_gene_to_trans_map d80f0f1d6c9d trinity_run_de_analysis bbbb39ad9a7e trinity_samples_qccheck d83aa367a381 |
| Single-cell | scanpy_cluster_reduce_dimension 35bc2eb568ed scanpy_filter f87ed6503715 scanpy_inspect 9d33775ec67d scanpy_normalize 5342ce58cd1e scanpy_plot 6adf98e782f3 scanpy_remove_confounders 80d4e2cac903 |
| Text Manipulation | column_maker 02026300aa45 |
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