Tools installed
| Section | Tool |
|---|---|
| Assembly | abyss fa5259cc561b, 0e93176640ac raven 33b7d8481a76, f8564b2d7f63 shasta 60573349e9ae |
| MiModD | mimodd_aln dee617b27094 |
| RNA-seq | circexplorer c3b5869b95fd |
| Send Data | ena_upload 59bb6d34fca6 |
Tools updated
| Section | Tool |
|---|---|
| Annotation | snpsift 5fab4f81391d |
| Assembly | meryl 5ae3496f9ca3 bandage d8b1027d6ce0 pretext_map d256a51a656b racon 7c847ec300b8 |
| BED | bedtools a68aa6c1204a |
| FASTA/FASTQ | umi_tools_count e654095ab143 umi_tools_extract 27ac32a22ad2 |
| FASTQ Quality Control | fastqc 3d0c7bdf12f5 |
| Mapping | rna_starsolo eec9494fdafa |
| Nanopore | medaka_consensus 9f70e869f61e medaka_consensus_pipeline 8dfe8a52346f medaka_variant 2bf63b38ee9b |
| Phylogenetics | iqtree b8476e82ac20 |
| Proteomics | cardinal_data_exporter be5d1c3c51e5 cardinal_filtering 105056844497 cardinal_preprocessing accf9fb6ea01 cardinal_quality_report 23d0394b5908 cardinal_segmentations 5279bc051339 cardinal_spectra_plots d333733dd571 |
| RNA-seq | describe_samples 46a4d8115515 rgrnastar 4074fc1940e2 trinity 48636f857c4b trinity_abundance_estimates_to_matrix 2e21a7c28b38 trinity_align_and_estimate_abundance 6c20d62180af trinity_analyze_diff_expr 29b50af3e07c trinity_contig_exn50_statistic 34840e9c79b0 trinity_define_clusters_by_cutting_tree 718a5b66395e trinity_filter_low_expr_transcripts 17101429bf0d trinity_gene_to_trans_map 318fd1a0646d trinity_run_de_analysis 3bff7c3cf63c trinity_samples_qccheck b58468eb4e64 |
| iVar | ivar_trim c092052ed673 |
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