Tools updated
| Section | Tool |
|---|---|
| Annotation | gff_to_prot 79261884facd transit_gumbel 8fc50fe60127 |
| Assembly | bandage b9e31c5c01c7 flye 276f5d8712d5 velvetoptimiser 82398ba86ba7 |
| Epigenetics | bwameth 6da3972210ee |
| FASTA/FASTQ | berokka 18c0086450bb cutadapt c053d4cad713 fastx_clipper cb1e251cac37 |
| Graph/Display Data | circos 290a11559985 ggplot2_heatmap d3a9e32672ec ggplot2_point 1acf88921176 |
| Metagenomic Analysis | kraken_translate bc3e90fd13be |
| Multiple Alignments | mummer_delta_filter fbca557a4847 mummer_dnadiff c9685bc0407c mummer_mummer bcd65de9725b mummer_mummerplot 4fc0cb2ac8ae mummer_nucmer e18267f90096 mummer_show_coords b4124df98b26 |
| Phylogenetics | hyphy_absrel 3f59ebfbfe3d hyphy_gard 5fcd1ece3a6e iqtree 9b892d7f82cc roary 91887494eb97 |
| RNA-seq | describe_samples 0f294e370b95 edger df0c8d0a5992 limma_voom e827f9aae031 trinity 3772d9a10f27 trinity_abundance_estimates_to_matrix 442e3696c634 trinity_align_and_estimate_abundance 00719b8004c9 trinity_analyze_diff_expr 2a89673cec86 trinity_contig_exn50_statistic beafdd47f8cf trinity_define_clusters_by_cutting_tree 8928f2226e40 trinity_filter_low_expr_transcripts a5ec0e79a93a trinity_gene_to_trans_map 7e3849997c91 trinity_run_de_analysis ab87da55fe61 trinity_samples_qccheck 50ba95fec4a2 |
| SAM/BAM | sam_to_bam 9bd1568619cd samtools_calmd 92ec40abcdcf samtools_mpileup 329deb17a9f7 samtools_stats 1cc79f49b8d5 samtools_view c370440f901e |
| VCF/BCF | vcfcheck aa8e8c96ca06 |
| Variant Calling | freebayes 57def2d7c093 |
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